rs27260491 SNP Detail

Summary

• ID
  rs27260491
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167379913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGG GGTCGCCCGA GGAGCTCGGA
  M
  GCCGCGCGGT CCGGTCCGGG AGGAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37507613	NES08846898	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A		C	C	A	A	A	C	C
ss45345097	mCV23600475	ABI	CRAMUS_MOUSE	f	SNP	A					A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27260491					SNP	A	A	A	A	A	A	C	C	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37507613	NES08846898	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167379913 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12746	CpG island 12746	within coordinates
Gm75792	predicted gene, 75792	within coordinates
Rr397509	regulatory region 397509	within coordinates
Rr570626	regulatory region 570626	679 bp distal
Rr570627	regulatory region 570627	within coordinates
Rr570628	regulatory region 570628	11 bp distal
Rr570629	regulatory region 570629	1215 bp proximal
Snai1	snail family zinc finger 1	202 bp upstream
Tssr21819	transcription start site region 21819	199 bp upstream
Tssr21820	transcription start site region 21820	1789 bp upstream