rs27260489 SNP Detail

Summary

• ID
  rs27260489
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:167381827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGGCAAC ATACCAATCC
  ATGTAGGACA AGAATAGAAT AGACACATCT TTTTTTTTTT TTTTTTTTTT TTTTTTTAAG
  AAGAGAAACA AAGACATGAC TTTGCTGTCC TCTCAGCCTT GGGCCACGTG GGAAGCTTCT
  AGAAGTGAGG GAAGGCTTCA GCCAGGCTTG GTGGGGGTTC CGGTTGGGCT GCTCTTTGGA
  R
  AGTGTGTCAG GCTTTGGGGT AGAGCTGTGC GTCTCTTGTG GTGGCCAGCA TTGGGGCAGT
  GAGGCCTGGG GGTGGCAGGG AGGTATTTGC AGGTCTCACT GACACCTTTA TTACTTGAAT
  AAGATTACCC GTTTCCCCCC CCCAGGCACG GATTGCCTCA GATTTAACCT ATAAAAGTGT
  AACAGGCTGC CTCTCTCCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37507611	NES08846863	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27260489					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37507611	NES08846863	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167381827 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12746	CpG island 12746	661 bp distal
Gm75792	predicted gene, 75792	542 bp upstream
Rr397509	regulatory region 397509	1697 bp downstream
Rr570627	regulatory region 570627	1702 bp distal
Rr570628	regulatory region 570628	1925 bp distal
Rr570629	regulatory region 570629	265 bp distal
Snai1	snail family zinc finger 1	Intron
Tssr21819	transcription start site region 21819	1697 bp downstream
Tssr21820	transcription start site region 21820	120 bp downstream