rs27260467 SNP Detail

Summary

• ID
  rs27260467
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167409822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTCTGT TTTGTTTGTG
  AGACAGAGTC TCTCCCTATA GCCCTGACTA TCCTGCAACT CACTATGTAG ACCAGGCTGG
  CCTCAGTCTC ATGGAGACCC ACTTGCTACC TTCCAAGTGC GGGATTGAGG TTCAAGGTCT
  AAGGACTGTA TCCAAGGTTG AGGGATGTAT CTTTCTGGCA GGGTTGCTAC AGAGACCAAA
  R
  ATGGAGCCAG GCATCGTGTG GTGTCTAGAG GCACATCTAA GACCTAAGAC AGATCTAGCC
  TAACTATTGT ACTGGCTATC TATCTATCTA AAATCAGCTT GAAACAAGCC AGAATTTTCT
  TTAAGAAAAA CCTCAATTGG TAAAATGCCT CCATCAGATT GGCCTGTGGG TCCCTCCCCT
  CTCTCCCTTT CTCCTTCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37507589	NES08846298	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27260467					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37507589	NES08846298	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167409822 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12748	CpG island 12748	1947 bp distal
Gm11476	predicted gene 11476	within coordinates
Gm74921	predicted gene, 74921	within coordinates
Rr1228	regulatory region 1228	1979 bp proximal
Rr570641	regulatory region 570641	1653 bp distal
Rr570642	regulatory region 570642	1898 bp proximal