rs27260465 SNP Detail

Summary

• ID
  rs27260465
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167411475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCTGCTAA GCTTCAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GGAGAAGAGG AGGGGAGGGG AAGGGAGAGG
  AGAGAAGAGA AGAGGAGAGG AGAGGAGAGG AGAGGAGAGG AGAGGAGAGG AGAGGAGAGG
  AGAGGAGAGG AGAGGAGAGG GTGTCTTGGC ACCACTCCTC GCTTTGTGAC TTACCACTTG
  R
  GATTGTCACA GTCTCCAAAT GAATGAGATG CCACTCTGGC CAACCCAGCT CCAGTGTGTG
  CAATGGCCTG TGTACACAGA GGGCTAGTCT TCCCTGTGTG ACTGTCTCTT AAGCATCACA
  CAAGCAATGC AGAAGGGACA GGATGGATAG ATAATAAGAG TGTGCCCTGA GCCGGGTGTG
  GTGGCGCACG CTTTTAATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37507587	NES08846274	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27260465					SNP	A	A	A	A	A	A	G	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37507587	NES08846274	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167411475 () rs orientation: forward

Symbol	Name	Function Class
Gm11476	predicted gene 11476	within coordinates
Gm74921	predicted gene, 74921	483 bp downstream
Rr1228	regulatory region 1228	326 bp proximal
Rr570642	regulatory region 570642	245 bp proximal