rs27260452 SNP Detail

Summary

• ID
  rs27260452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167413996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGGTGGC CATGGGGAAT
  GTCATCGACT CCGTGTGGTG CTGGGTACAC AGCCGCTGAG CCAGCGCAGC GCCATGGAGG
  GTGACTAGGA AGCGTTTCAC CTCCAGATGT GCCTCATGCA CTAACCCTGC GGCCAGGTGC
  TGCTCACTCC CTCGGTGATG GCCAGGCGCT CCGGGCGAAT GAGCGCTTCT TTCCATGTGC
  Y
  GTAAATGTGG GTAAATGTGC TGAGTGTCGT CAGCCTTCAC ATCACTCATC TCCAGTTCCA
  GAACATTCCC TAAGAGGAGC CTTCCCCCGC CCCTGTTCCC CATTGCTGTG GGTTTGTCTC
  TTCAGTGGTC TGGAACGGGC TCCTGTGCAG AGGCCTCTGA GGCTGCCAGC TTTCCCACCT
  TCAACCATGC AGTGCCTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37507574	NES08846237	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27260452					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37507574	NES08846237	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167413996 () rs orientation: forward

Symbol	Name	Function Class
Gm11476	predicted gene 11476	within coordinates
Rr1228	regulatory region 1228	835 bp distal
Rr570642	regulatory region 570642	1166 bp distal