rs27260413 SNP Detail

Summary

• ID
  rs27260413
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:167455168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAGACAGC AGTGGGCAGC
  ATGGATGCTG GGGATGGAGC TCTGGTCGTC TGGAGCGGCA AGCACCCTAA CCACTGAGCC
  ACCTCTCTCT CTATAAAACC ATGTTGCTAA CTAACACACA CACTGTAGGG TCTCAGCACC
  TGGGAGGTAG AAAGTGGGCA AATTTCTGCC AGTTTGAGAT GACAGGGTCA GCCCCAGCCT
  Y
  GTAAGGACTA AGTTAAGAGC CTATCTTTTT TGTTTGTTTG TTTTTTGTTT TTCAAGACAG
  GGTTTCTCTG TGTAGCCCTG GCTGTCCTGG AACTCACTCT GTAGACCAGG CTGGCCTCGA
  ACTCAGAAAT CCGCCTGCCT CTGCCTCCCG AATGCTGGGA TTAAAGGCGT ACGCCACCAC
  TGCCTGGCTA AGAGCCTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37507534	NES08845350	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27260413					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37507534	NES08845350	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167455168 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm20431	predicted gene 20431			Intron
Rr570662	regulatory region 570662			1541 bp distal
Rr570663	regulatory region 570663			1800 bp distal
Rr570664	regulatory region 570664			1737 bp distal
Rr570665	regulatory region 570665			258 bp proximal
Rr570666	regulatory region 570666			1280 bp proximal
Ube2v1	ubiquitin-conjugating enzyme E2 variant 1			Intron
				Noncoding-Transcript-Variant