rs27260362 SNP Detail

Summary

• ID
  rs27260362
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167513207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATCCTCCTA TTCCCATAGA CAATCCTTGA AGCCGGGGTA
  GAGCTCGGAT GTCCAAGGTT CTCGGGTCTA GTTCTATAAT ACATGGCCTC TAATCCCAGG
  W
  CTGGACCTGT TACTGATCTG CTTAGCAGCC TTTGAGCCAG AAGTCTCACA GACTCATTTC
  CTCCTTTTGT TGACCCAGGT AAATCAAACA GACCAGGAGC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss37507482	NES08844320	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs27260362					SNP	T	T	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37507482	NES08844320	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167513207 () rs orientation: forward

Symbol	Name	Function Class
Rr397516	regulatory region 397516	1033 bp upstream
Rr570692	regulatory region 570692	within coordinates
Rr570693	regulatory region 570693	899 bp proximal
Rr570694	regulatory region 570694	1684 bp proximal