rs27260361 SNP Detail

Summary

• ID
  rs27260361
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167513296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCACTGG GCATCCTCCT
  ATTCCCATAG ACAATCCTTG AAGCCGGGGT AGAGCTCGGA TGTCCAAGGT TCTCGGGTCT
  AGTTCTATAA TACATGGCCT CTAATCCCAG GTCTGGACCT GTTACTGATC TGCTTAGCAG
  CCTTTGAGCC AGAAGTCTCA CAGACTCATT TCCTCCTTTT GTTGACCCAG GTAAATCAAA
  Y
  AGACCAGGAG CTTCCAGGAA TTGCTCCTCC TCTTTCCTTG GCTGCAGGCA GTGCCAACAG
  CCTTTGACCC ATGGGTTGTC CAGGGAGCTG GGGACTGACA CTTTCAGCCC AGAGGCACTC
  AGCTGCTGGA GGAGGGTGTG GCTGCTGGAG CCACAGTGAC CAGCATAATT GCCTTTCCTT
  TCTTTTCGCC TCCTTTAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37507481	NES08844321	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27260361					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37507481	NES08844321	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167513296 () rs orientation: forward

Symbol	Name	Function Class
Rr397516	regulatory region 397516	944 bp upstream
Rr570692	regulatory region 570692	within coordinates
Rr570693	regulatory region 570693	810 bp proximal
Rr570694	regulatory region 570694	1595 bp proximal