rs27260357 SNP Detail

Summary

• ID
  rs27260357
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167514536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACCCCCCC CCCCCAAAAT
  GCAAAGCGAG GTCTTAGAAC AGTACAAAAC AACTGTTCTG CTGTGATAGC AGCTGGAGAT
  AGAGTCTCCT GGGAGCCCCG GGCAGCTGTC AGCTGTCTAA ACTGGCAGTC GGGGAGAGGG
  GGAGGAGAGA GAGGGAGAGA GAGATGCGTT AGCCTCAGAG TCAAGTCGAC TGGGTACCAG
  Y
  TTTTATCAAT GGAACAGTCC TGGAAGGTCC AGGTCTGGGG AGGGTGGGGC CTCTGCTGAG
  TCACCTTAGC TCCTGTTGAA AACACCAACT GTTTATTTTT TTCCCCCTAG GGCTTTGAAA
  TTTATTAGTT TGGTTTTTCT AGGCTGTCCT GGAACTCTCC ATGTAGACCA GTCTGTCCTT
  GAACTCACAG AGATCCTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37507477	NES08844303	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27260357					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37507477	NES08844303	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167514536 () rs orientation: forward

Symbol	Name	Function Class
Rr397516	regulatory region 397516	within coordinates
Rr570692	regulatory region 570692	931 bp distal
Rr570693	regulatory region 570693	within coordinates
Rr570694	regulatory region 570694	355 bp proximal