rs27259070 SNP Detail

Summary

• ID
  rs27259070
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:131370196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCCAGGT TGAGGTTTTC
  AGCTGTGGCT TTGTGGAAGC CTGCAGTGAT CTGGATCCCT CCCATAAGGC CCTGCCTCTT
  AGAGGTTCCA TCGTGTCTCC ACAGTGCCGC AGACCAGGTC CTTACATGTT GGCCTCTGAG
  GAACACAGTT TAGCTACATA CTGTGGCAGT AACTGTGCAG TTTGCTTGGG CTAGTTGGGA
  W
  GGGAAGAAGG GAAGTTCCTA GGTGTGGTAT AAGCAAGCTA GCTGCTTGTC TAATTAATGG
  TCTTTTCAAC TTAATGGCAG AGTGGCAGAA GGCCGGGTTT TCTCTGGGTC AGCCTGTTTA
  TTGAGCCCAT CTCTCATTTG TATTGGGCAA CAGGCAGGCA GTGTCCTGCT AAGGGTAACC
  ATGATAACCC CATGCTTGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37468690	NES08995401	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27259070					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37468690	NES08995401	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131370196 () rs orientation: forward

Symbol	Name	Function Class
Gm30732	predicted gene, 30732	mRNA-UTR
Rr565283	regulatory region 565283	905 bp distal
Rr565284	regulatory region 565284	995 bp distal
Rr565285	regulatory region 565285	1657 bp proximal
Rr565286	regulatory region 565286	1929 bp proximal