rs27259068 SNP Detail

Summary

• ID
  rs27259068
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:131370408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTGTTTAT TGAGCCCATC TCTCATTTGT ATTGGGCAAC
  AGGCAGGCAG TGTCCTGCTA AGGGTAACCA TGATAACCCC ATGCTTGTAT ATTTAATAGT
  R
  GGCAAAAGGG TTGGCCACTG CCCCTTTCCA TCCCCTAAAG CAGAGCTAGT GGCTAGAGGG
  ACATTACTGT GTCCCTTTAG TCTAGTGTTG CTAATAATA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37468688	NES08995403	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		G	G	A	A	A	A	G	A
ss45213888	mCV23915978	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		G
ss147606957	ENSMUSSNP5441688	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27259068					SNP	A	A	A	A	A	A	A	A	G	G	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37468688	NES08995403	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131370408 () rs orientation: forward

Symbol	Name	Function Class
Gm30732	predicted gene, 30732	Coding-Synonymous
Rr565283	regulatory region 565283	1117 bp distal
Rr565284	regulatory region 565284	1207 bp distal
Rr565285	regulatory region 565285	1445 bp proximal
Rr565286	regulatory region 565286	1717 bp proximal