rs27258954 SNP Detail

Summary

• ID
  rs27258954
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130907829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCTCCACAC CCAATTTGTT CTGTTTTGTA AGAAATGAGG
  TTTTATTGTG TTGCTCAGGC TGATCTCAGT CTCCTGGCCT CAAGGTATCC TCCCATGTCG
  R
  TACACAGCAC AAGGCGTAGG AAAAGTGGCA GATTTTTTTA AATTAAGTTT TCTTTCCAAA
  ATATAGATTC AGAAATGTGA GATTTTCACA AAGTGAACC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37469877	NES08985347	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G		A	A	A	A
ss147598224	ENSMUSSNP186975	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27258954					SNP	A	A	A	A	A	G	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37469877	NES08985347	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130907829 () rs orientation: forward

Symbol	Name	Function Class
Rr565175	regulatory region 565175	1942 bp distal
Rr565176	regulatory region 565176	1711 bp proximal
Tssr26336	transcription start site region 26336	1377 bp downstream