rs27255590 SNP Detail

Summary

• ID
  rs27255590
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132425440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTGACCT CTCCAGTCTA
  AGCTTGACTT CTAAGCTACA GAAACAAATT CCTGCTTGTC CTTGTACTGG AAGAATTAAA
  GGGAACCGGA CCCTTTAGAC TTCGGGAGCA CATCTGTTCT GTTTCTTTTT GCATTTTCCT
  GCTGCAGACA ACAGAGTGGG AATTATCCAA ACCTCTTAGG ATTTATCAAT TTTACCAATG
  R
  ATTCATGTGA CTATATATAA AAATATGGCA TAAAAAATCG TTCAAATACT GTCCTAAAGA
  AAAGGAAAAG AGCCAGGCCC AGTAGTGTAG CTATTGGAGG CTGTGGGAGA AGGATTGGAA
  GTTCAAGACC TGACTGCTTA CAATGAATTT TAAGCTAGTG GGAGACCTCA GTGTAGAGTG
  CAAAGGCTCA AAGTTCCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37464813	NES08979620	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27255590					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37464813	NES08979620	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132425440 () rs orientation: forward

Symbol	Name	Function Class
Rr565491	regulatory region 565491	751 bp distal
Rr565492	regulatory region 565492	793 bp proximal