rs27255578 SNP Detail

Summary

• ID
  rs27255578
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132427238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCTGCAT GTATGTCTGT
  GTACTACGTG TGTACCTGGT GCCTGTAGAA GCCAGAAAAA GAATCAGCTC CCCCAAAACT
  GGAGTTATGG ACTGCTGTGA GCCATCACAC GGGTGCTGGG AATTTACCTG GGTCCTCTTG
  AAGAGCACCT AACTGTGCAG CCCTCTCTCC AGCCCCTTAA ATAACATTTC TTAAAGTTGG
  Y
  AAGCAAAAGT GTTTCATTGA CTGAGACAGT CCCTCATAAG TCATAACATG CAGCCAAAGA
  ATTCTGTACT AAGATCTTTA GCAGTAAAGA ACCACTTATA GTTTTTCCTG ATTGATTAGT
  ATTTCCTTAC AAAGGACATT TACATTGCTT TATGTTTTGT TTTGTTTGTT TGTTTGTTTG
  TTTTTAAATT TTCAATGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37464801	NES08979527	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27255578					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37464801	NES08979527	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132427238 () rs orientation: forward

Symbol	Name	Function Class
Rr565492	regulatory region 565492	803 bp distal
Rr565493	regulatory region 565493	778 bp proximal