rs27254646 SNP Detail

Summary

• ID
  rs27254646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:136560866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCCAGAGC ATTAAGCATG
  CTAAGCAAGC ACTCATCCCC TAAACTATAC TGCAGGCCTC TGCACGTGAT TTTTTCCCCC
  ATCTTTCCCT CCTGGTTTGA GAATCGAGGC ATGCTCACAG CTCTCCTGAA GCAACTGCTT
  ATAATTTCCT GTTTTCAGAA TCAGTCTCCT AATAACCCAC CAGGGCACTG TAAAACTTGG
  Y
  CTCCTCATCC ACAGACAGTG TTGGTCAGTA TTGCTGCTAT TCTGACGCAG CTGAAAGGCC
  TCAGCGACGT GTGTGGGCCT CAGAAGAAAG GCTTTTGGAT CCTGTTGTCT CAGCAATGCT
  TCTGCTGTCA ACCTGCAGTC ACAGATCTTA GAATTCATGT GTCCTCAGTA TCATATCCCT
  TTCTTAGTCT TTTTTTGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37449769	NES08966662	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	C	T		T	C	T	T
ss147649447	ENSMUSSNP5143245	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T				T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27254646					SNP	T	T	T	T	T	T	T	T	C	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37449769	NES08966662	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:136560866 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr565864	regulatory region 565864			1369 bp proximal
Rr565865	regulatory region 565865			1480 bp proximal
Snap25	synaptosomal-associated protein 25			Intron
				Noncoding-Transcript-Variant