rs27250200 SNP Detail

Summary

• ID
  rs27250200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:138244962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGTGAGT CTGAACTTCG
  GACAAGGTTC CAGGTGATGG TGAGCCTGTT GGTGTGTTGA CTGCACTTTG GGTAGCTTGC
  TGAGGTCCAG GCCTGAGAGA TCTCAGCAAA CAGAATCTGC TCATTCCCCA CTGTGCCTCT
  TCTTAGTTTC CTTTTTGCTG CATCCCCTGG ATATGTGATT AAAAAGCACA AAATGACAGG
  Y
  CTTGTTCAGA ATGTGCCCAG TTGTAGCTGA GTCTGGCTTT TGCTTTTCCT GCTGGAGGCT
  GCAGAAGCCC ATATAGTCTG AAATCTAGAC ACCCTTATCT AGCTGTTTTC TTCAGGTATG
  ACAGGGCTGG TTTCATAACC TGGTTACCAG AAGCAATTAG GGCCATCGTC CAGATTTTCA
  GATCCATTTC CCATGGAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37443822	NES08970988	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27250200					SNP	C	C	C	C	C	T	C	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37443822	NES08970988	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:138244962 () rs orientation: forward

Symbol	Name	Function Class
Rr565990	regulatory region 565990	30 bp proximal