rs27248790 SNP Detail

Summary

• ID
  rs27248790
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:143886358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCCGAAGT TAAAAAGTTG ATCTGGGGAG GGATCCCTGT
  TACACAATAG GGAAGTCTGA AAGTGAGACA GGATGGAGAA GATGGCTACA AAGCAGGTTA
  Y
  TTCCCTAAAC AGTGTGCCTC CCTGAGGACA TTTGGGAGAT TGGAGTTGTG TTACCTAAGG
  GAATAGGTGT GTGTTGTCCA TACCTCCCTG GTTGGGTAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37482609	NES08932519	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	T	C	T	C	C	T	T	C
ss147779383	ENSMUSSNP2732206	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27248790					SNP	T	T	C	C	C	T	C	T	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37482609	NES08932519	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143886358 () rs orientation: forward

Symbol	Name	Function Class
Banf2	BANF family member 2	Intron
Gm75473	predicted gene, 75473	within coordinates
Rr566364	regulatory region 566364	391 bp proximal
Rr566365	regulatory region 566365	1859 bp proximal
Rr566366	regulatory region 566366	1967 bp proximal