rs27248789 SNP Detail

Summary

• ID
  rs27248789
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:143886475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGATCTGGG GAGGGATCCC
  TGTTACACAA TAGGGAAGTC TGAAAGTGAG ACAGGATGGA GAAGATGGCT ACAAAGCAGG
  TTACTTCCCT AAACAGTGTG CCTCCCTGAG GACATTTGGG AGATTGGAGT TGTGTTACCT
  AAGGGAATAG GTGTGTGTTG TCCATACCTC CCTGGTTGGG TAATACTCCC AGACACGGAA
  Y
  GGACAGAGCC ACAGGCATTG GTTTTTGTGG GAACTCTTGA GTCCTGAAGG ACCAGTGGCA
  GGGCTGGGAC AGCATCTGCT AAGGTTGCCC TGGAAAGACT GGCTCTGGAT CTTCCCAGCC
  CTCAGCATAT AGCTTGCCTG TGTCTTTTAC TGAGAAGACA CGCTGGTCTC CACCACTCTG
  ATCCTCCATT TCCCCAAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37482608	NES08932520	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27248789					SNP	T	T	T	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37482608	NES08932520	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143886475 () rs orientation: forward

Symbol	Name	Function Class
Banf2	BANF family member 2	Intron
Gm75473	predicted gene, 75473	within coordinates
Rr566364	regulatory region 566364	274 bp proximal
Rr566365	regulatory region 566365	1742 bp proximal
Rr566366	regulatory region 566366	1850 bp proximal