rs27248773 SNP Detail

Summary

• ID
  rs27248773
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:143887995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGAAACA ACTTCCTGGG
  GTGGTATGTG CTACAGACAA GTACAACTAC CCTCAGACAG CCCTGTGTGC AACAGTCATA
  CAGGTAGACA GTCAGGGTCT GCCAACTGCT TATAAAAATT ACTTTTGCCT AGGGACCTTA
  ACATATGCAG TGGAAGCCCA GATTCACTCT CACTACAATT ACACATCAAA ACAAGCAAAA
  Y
  CCATCTGTGC TTTTTCTTAG ACATCTCCAC CCTGTGGGGG TACAGGGAGA CACAGCCTAG
  GCCTTGAAAC ATTTACATCT TGGGTGGCTT TTCTTAGCAG CAGAGTGAGG GATCTGGATT
  TCACTCACGA GCTCACTGGG ACAGCAAAGG GACAGGAGAG GAACTGAGTA GTCTAATGTC
  AGGTGTAGCC AGCTCTTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37482592	NES08932410	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27248773					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37482592	NES08932410	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143887995 () rs orientation: forward

Symbol	Name	Function Class
Banf2	BANF family member 2	Intron
Gm75473	predicted gene, 75473	within coordinates
Rr566364	regulatory region 566364	1022 bp distal
Rr566365	regulatory region 566365	222 bp proximal
Rr566366	regulatory region 566366	330 bp proximal