rs27248765 SNP Detail

Summary

• ID
  rs27248765
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:143888852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGCTTCTG CTTACTTACC AGCCCTTGAA GCACATTCAC
  TCTGTTCTGT CTTGGACATG CGGGCTGTTT GCTGCAAAAT GCCAAGGGCA ACCACTCAGA
  Y
  GCTTTACCTA GACACTATAT GGGCTGCAGC GCCGTCCAAG ACACTTGGGA AATGGTCGTT
  TCCCTATAAG CCCAAGGAGA CAGTCACTAG CTCCATGCG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss37482584	NES08932428	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T		C	C	C	C
ss147779556	ENSMUSSNP1971043	ENSEMBL	ENSEMBL_Sanger	f	SNP	C					T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs27248765					SNP	C	C	C	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37482584	NES08932428	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143888852 () rs orientation: forward

Symbol	Name	Function Class
Banf2	BANF family member 2	Intron
Gm75473	predicted gene, 75473	517 bp upstream
Rr566364	regulatory region 566364	1879 bp distal
Rr566365	regulatory region 566365	528 bp distal
Rr566366	regulatory region 566366	391 bp distal