rs27248763 SNP Detail

Summary

• ID
  rs27248763
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:143888919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCTCTCC CAGGGGCCTC
  TTCATCCTGA CAGGAGGCTT CTGCTTACTT ACCAGCCCTT GAAGCACATT CACTCTGTTC
  TGTCTTGGAC ATGCGGGCTG TTTGCTGCAA AATGCCAAGG GCAACCACTC AGACGCTTTA
  CCTAGACACT ATATGGGCTG CAGCGCCGTC CAAGACACTT GGGAAATGGT CGTTTCCCTA
  Y
  AAGCCCAAGG AGACAGTCAC TAGCTCCATG CGTAGCTTCA AACCCACCAG TCATCCAGCT
  CTACCCGTCT GGGATCTTCA GGCCTGCCAC TTCCTGTTTT GTTCCAGAGA AGGGAAGGCA
  AGCCCCTGCC CCTACTTCCT GCTTCCTCAG CCCGAATTCT TCTTCTCTGC CTGGCGCTGC
  TTCCTCCTCT TCTCTGGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37482582	NES08932431	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27248763					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37482582	NES08932431	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143888919 () rs orientation: forward

Symbol	Name	Function Class
Banf2	BANF family member 2	Intron
Gm75473	predicted gene, 75473	584 bp upstream
Rr566364	regulatory region 566364	1946 bp distal
Rr566365	regulatory region 566365	595 bp distal
Rr566366	regulatory region 566366	458 bp distal