rs27247210 SNP Detail

Summary

• ID
  rs27247210
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:146068018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATGTTCG GTGGCAGTAG
  AACTTTTTTT TTTTTTAAAC ATGAAGTCTG ACCCGCTTGA CAAGACCTGT TTCCGGGAAC
  AGCAGCTGCC ATCTGCGTTG GCCTCGACAT TTTTGCCCTT GACCACAGGG TGTGAATTCA
  CCAGTACTCA TCTTTATACA TGCAAATGTG ACTTACTCTT TCACATTCAC TAGTGGTCCT
  Y
  TGTCTACTGG GGAAATGATT CTAGTCAGAA CAGATATACT ACTTCTCCAA AAGAAAAGTC
  AAATTTTTGT TTGTGTGTGT GTTTCTAAGT GAAGCTGCAT AAGAAACAGA TGTTTTAAAT
  TGCCCCCCCC CAAAGTGTAG ATGAAGAGCA CTGGTGGACT AATTTCAAAG GAATTCAAGT
  TAGCATAATA TTCTACCACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37486532	NES08982009	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	T		T		C	C		C	T	C	C		T
ss45212990	mCV23990769	ABI	CRAMUS_MOUSE	f	SNP	C	T					C		C
ss147857149	ENSMUSSNP4933843	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
ss320541165	CHEV_2_146051834	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27247210					SNP	C	T	C	T	C	T	C	T	C	C	C	T	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37486532	NES08982009	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:146068018 () rs orientation: forward

Symbol	Name	Function Class
Insm1	insulinoma-associated 1	1078 bp downstream
Rr566646	regulatory region 566646	within coordinates
Rr566647	regulatory region 566647	201 bp proximal