rs27244964 SNP Detail

Summary

• ID
  rs27244964
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:131370910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTGTCATG AGCCAAGCCA TACCAGCAGG CTCGTCTGGA
  GGAGAAGGGC TGTGCCCACT GACCAGGATA AAGCAGAGGA GCACACCACA CAGACCATAC
  R
  GTGCCGCCTA CGCCATCTTT CCACAGACAA AGCAGGGCTT TCCCTCCCAC CGCTCACAGT
  CCAGTCCAAC TTCATCTTCT TCGTCTGAGC ATGTGGCAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37468684	NES08995407	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A			A	A	A	A	G
ss45212840	mCV23915989	ABI	CRAMUS_MOUSE	f	SNP		A	A					A	G
ss147606972	ENSMUSSNP502641	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27244964					SNP	A	A	A	A	A	A	A	A	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37468684	NES08995407	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131370910 () rs orientation: forward

Symbol	Name	Function Class
Gm30732	predicted gene, 30732	Coding-NonSynonymous
Rr565283	regulatory region 565283	1619 bp distal
Rr565284	regulatory region 565284	1709 bp distal
Rr565285	regulatory region 565285	943 bp proximal
Rr565286	regulatory region 565286	1215 bp proximal
Rr565287	regulatory region 565287	1655 bp proximal