rs27244962 SNP Detail

Summary

• ID
  rs27244962
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:131371057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACCGCTCA CAGTCCAGTC CAACTTCATC TTCTTCGTCT
  GAGCATGTGG CACCACCATT CTTTGGCTTC AGAACACTCA GGTCACTATC CACTCCCTAT
  Y
  ATCTGCTTTC CCATAGGCGA GTCTCATCGA CTCCTCTTAC GCATTCTGAA TCGCATCCTT
  TGAGATACCC CACTGTACCT GCATCTCTGC CTTGAGTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37468682	NES08995409	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		T	T	C	C	C	C	T	C
ss45315547	mCV23916001	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		T
ss147606981	ENSMUSSNP4182293	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27244962					SNP	C	C	C	C	C	C	C	C	T	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37468682	NES08995409	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131371057 () rs orientation: forward

Symbol	Name	Function Class
Gm30732	predicted gene, 30732	Intron
Rr565283	regulatory region 565283	1766 bp distal
Rr565284	regulatory region 565284	1856 bp distal
Rr565285	regulatory region 565285	796 bp proximal
Rr565286	regulatory region 565286	1068 bp proximal
Rr565287	regulatory region 565287	1508 bp proximal