rs27244954 SNP Detail

Summary

• ID
  rs27244954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131372282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATTCTCTGA GCTTTTCTGA ATTCCTGAGA ATGAACCAAG
  CAAGCGGTCA CTGGACCCCG TTTAATAAAC ACTGAACAAT GAATAATATC AGAAGTGTGA
  Y
  TTCAATTTAC TCTTCAATCT GGTGTCAGAG CCCCCCACAC GGTGTGGCTC TGGGTTGATG
  GAAGTGACAC AGCTGTGAGG AACAGCATTG CGTTTACTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37468674	NES08995417	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	C	T	T	T	T	C	T
ss147607019	ENSMUSSNP5397420	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27244954					SNP	T	T	T	T	T	T	C	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37468674	NES08995417	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131372282 () rs orientation: forward

Symbol	Name	Function Class
Gm30732	predicted gene, 30732	18 bp downstream
Rr565285	regulatory region 565285	within coordinates
Rr565286	regulatory region 565286	136 bp distal
Rr565287	regulatory region 565287	283 bp proximal