rs27244692 SNP Detail

Summary

• ID
  rs27244692
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131479525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTTCACAC AGGGTTAACT GAGGCAGCAA CAGAACATAG
  CTTAGACATC TTCCACTTTT TAGGATGGGC TAAATTGAAC ATCAGTATGG AAGCATTTCA
  M
  AAACTTTCAA GTGCTGAGCA ATTAGAGGGA AAGTTCATTT TTAGGGACTA CAGTGGAAGA
  TGGCCATCTT CACGGTAGGT AGAGATTGTG CCTTCTGCA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37468411	NES08993694	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	A	C	C	C	C	C	A	C
ss45302049	mCV25124174	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27244692					SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37468411	NES08993694	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131479525 () rs orientation: forward

Symbol	Name	Function Class
Rr373874	regulatory region 373874	within coordinates
Rr565298	regulatory region 565298	1429 bp proximal