rs27244691 SNP Detail

Summary

• ID
  rs27244691
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131479598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTGAACATC AGTATGGAAG CATTTCACAA ACTTTCAAGT
  GCTGAGCAAT TAGAGGGAAA GTTCATTTTT AGGGACTACA GTGGAAGATG GCCATCTTCA
  Y
  GGTAGGTAGA GATTGTGCCT TCTGCAGGCA TTTTCTCAGG ACTAAGTCAT CCAGGGGCAC
  ACATTAGGCA GTTGGCAAGG TGCTGAATGT CCCTTCCCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37468410	NES08993695	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C			C	C	T	C	T	C
ss45324463	mCV25124175	ABI	CRAMUS_MOUSE	f	SNP	C	C					C	T
ss147609104	ENSMUSSNP4209292	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C						T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27244691					SNP	C	C	C	C	C	C	C	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37468410	NES08993695	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131479598 () rs orientation: forward

Symbol	Name	Function Class
Rr373874	regulatory region 373874	within coordinates
Rr565298	regulatory region 565298	1356 bp proximal