rs27244684 SNP Detail

Summary

• ID
  rs27244684
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131480265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACATGGCT GCTGCTGTAG
  TGGGGAGTCA GGGTACTTGC GGATTGCCTT GACACAGAGA AATCAAAGCC TTTGCTTCCC
  AGAAACACTC CATGCTACTC AAATTTGGAA GGTACAAAGC CTGCGTGGAC CTCTTTGTGA
  TTACACCACA GTGCCACAGA AATGGTAACG TGAAGGCCAA GTTCAAAGGC ATTTCCAAGC
  Y
  CAGACACCCA TGGATCTACT ATTTATTGCT GTTAGTTCTT GCTGTTCTTG AGTTAACGTT
  AGCCCTCTTT TTGACATTCA CGGGTGAAGG CAGAATCCAG GGGTAGATCA CGGGGCTCCT
  TTTATGCTTG AGCTCTAAGA AAGCCTTTTA TACAATGGTA GTTGGGGAAG GCAAGGGTTT
  GTGTTTGCTG GAGCCAGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37468403	NES08993702	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27244684					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37468403	NES08993702	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131480265 () rs orientation: forward

Symbol	Name	Function Class
Rr373874	regulatory region 373874	412 bp downstream
Rr565298	regulatory region 565298	689 bp proximal