rs27244675 SNP Detail

Summary

• ID
  rs27244675
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131481751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGTGGGTG ATGTTGCAGA GACAGGGCAC ACACATCCAC
  ACTCCTTGCC TTTTGTGGGA GCCCTCAGTA CCAAACACCA AAGATCATAG CTGGACTACA
  Y
  ATACCAGGAA GAACAGAATG AAAGATTTAG GGAAAAAGAT GTCTCTAGGA AGCCCAGTGT
  TGAACTAAAC ACTCCCAGTT TGGCTCTTGT TAAATACCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37468394	NES08993711	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C	T	T	C	T	T	C	T
ss45357011	mCV25124309	ABI	CRAMUS_MOUSE	f	SNP							T	C
ss147609129	ENSMUSSNP347397	ENSEMBL	ENSEMBL_Sanger	f	SNP								C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27244675					SNP	T	T	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37468394	NES08993711	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131481751 () rs orientation: forward

Symbol	Name	Function Class
Rr373874	regulatory region 373874	1898 bp downstream
Rr565298	regulatory region 565298	398 bp distal