rs27244488 SNP Detail

Summary

• ID
  rs27244488
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:145399179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATATTAGGCA AAGGATGGAA GAATGTGCCA TGTCTGACCA
  GCATTACTTC ATTGCTCTAT TTTATTAGTT AGTGGATCTG GAAGCAACCA CAGTGGCTTC
  M
  CTTGACAAAC GTTCACTAAG TAATTCGTGA ACAAGATGGA AAATGGGAAA CGTCCCATGT
  TCCTTCCTCT CCCACTGGAC TCTATAACAA GATATGGAC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37477510	NES08928772	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	C	A	C	A	A	C	A	A	C	A	A	C
ss147835135	ENSMUSSNP2954275	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27244488					SNP	A	A	C	A	C	A	C	A	A	C	A	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37477510	NES08928772	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145399179 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr566543	regulatory region 566543			1159 bp distal
Rr566544	regulatory region 566544			364 bp proximal
Rr566545	regulatory region 566545			467 bp proximal
Slc24a3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3			Intron
				Noncoding-Transcript-Variant