rs27244479 SNP Detail

Summary

• ID
  rs27244479
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:145401220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGATCAATGG CTTGTAAGGG CTTGATCCCC AACTGTTGGC
  ACTACTGGAA GGTTTGTGAC TGGAGTCCTG CTCAAGGAAG TGAAGTCATC CTATCCCTTG
  R
  TGTACCTAAA AAGTGATGTT GAGACCGCAG TCCCTCTGCT CTCAGCTCAT CAAGAAGTAA
  GCAGCTTCGC CCTACCATCC GCCCCCATGA TGCATTGCG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37477501	NES08928663	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	G		A	A	G	A	A	G	A	G
ss45296746	mCV23985224	ABI	CRAMUS_MOUSE	f	SNP		A						G		A
ss147835212	ENSMUSSNP4201902	ENSEMBL	ENSEMBL_Sanger	f	SNP		A								A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27244479					SNP	A	A	G	A	G	A	G	G	A	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37477501	NES08928663	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145401220 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr566544	regulatory region 566544			1455 bp distal
Rr566545	regulatory region 566545			1553 bp distal
Slc24a3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3			Intron
				Noncoding-Transcript-Variant