rs27243539 SNP Detail

Summary

• ID
  rs27243539
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131096055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTTTTAG GGTTTGGACT
  GGTGACGTGT TTCCCTTTTA AAACAGCATT TGTGAGATTA CAGATAATCT TGCTCGATCT
  TGGACTTTGC TGGGTTATCT GCTGAGACAG TCTGTTTTAC CTTGGGCTGA CAACTCTGGA
  AGGCTAAGTG CTGCTACAGT CATTTCCCCG CCCCTAAAGA GAGTCAAAGT CATCTTTTTG
  S
  TCTGCCGGAC TGCTCAGCTT CTCTCAGCAG AGCCTGCCCC CTGGCTGTGC ATTTCAGTAA
  GCACACATCG GACAGTCTGT TGAAGGTCAG ACACCTTTAT TTTTTTGTTT TGTTTTTTGC
  TTTGTTTCCC AGGCTAACCT TGAAGCACCC GCAGCAGTGT CCCTGCCCTG CCCTACACAG
  TATTGCATTA TAGGCAGGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37469458	NES08985979	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27243539					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37469458	NES08985979	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131096055 () rs orientation: forward

Symbol	Name	Function Class
Gm75131	predicted gene, 75131	80 bp downstream
Rr397320	regulatory region 397320	within coordinates
Rr565224	regulatory region 565224	within coordinates
Rr565225	regulatory region 565225	31 bp proximal
Rr565226	regulatory region 565226	1649 bp proximal
Rr565227	regulatory region 565227	1756 bp proximal