rs27243409 SNP Detail

Summary

• ID
  rs27243409
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:131901847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCACACA TGTGGTAGAT
  ATAAATACAT GCAGGCAAAA CACTCATGCT CATAAATTAA ATATTAAAAT TTTTTTAAAA
  AGGAGCTCAT AACGGCTGAG CCATCTTTCT AGGCCCTAAT TTGGTATTCT TGAATTGAAA
  ACAGAAAAAT TTATATCAGA GCCTGTGAAG TTGAGTTTTA AGGAATTATA CAATTTAATA
  M
  AGTATGAGTC TGAGAAATCA AAAGTTTTAC AGAGACAAAG GAGAGGCACC CATTTAAACA
  ATGATCCCCC GAGGGCCAGT GAGATGACGA TTCATCGGGT AAGTGTGCCT ACTGTTCTGG
  CAGAGGCAGG TTTGGTTTCT AACACCTACA TGGTGCCTCT CATCCTTCTG TTTCTCTGGT
  TCCAGGGAGA GCTGATGCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37466628	NES08993116	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	A	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27243409					SNP	C	C	C	C	C	C	C	C	A	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37466628	NES08993116	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131901847 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr565386	regulatory region 565386			1933 bp distal
Rr565387	regulatory region 565387			192 bp proximal
Slc23a2	solute carrier family 23 (nucleobase transporters), member 2			Intron
				Noncoding-Transcript-Variant
Tssr26445	transcription start site region 26445			853 bp downstream