rs27234803 SNP Detail

Summary

• ID
  rs27234803
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:27260261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCGTGGAG TTTATTATTC
  AGAGGCAGAG CAGAGTCTCA GCGAGAGGAG AAAAGAGCAG AGAACACAGA ACAGGCGGTG
  GGTCTCAGGA GCTCCTTCGG TACATGCCCA GTCGCCAGTC CAGCTCATAC CAACCACCAG
  AACACTCTAG AGCCCAGGTC AGAGCCGTCA CAGAATGGAG TGTTAACCTT CACACACATG
  Y
  AAATGAGAGC TGACATCAGA GTGACACAAA TTCCTGGGGA CAGCAGCAGT CCTCCGCGTG
  CTCACCTGTG CTGGCATCCT TGTTATTGCT GTTCTGGAGA CAAGAAACCA GCCTGGCAAA
  CCAGGCCGCA TGGAACGCAA TCCCAATCCC GCATTTGGGA GACTGAAGCA GGGGTCTGTG
  AGTTCGAAGA CAGCCTGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37415336	NES08767527	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27234803					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37415336	NES08767527	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27260261 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr553527	regulatory region 553527			942 bp distal
Rr553528	regulatory region 553528			1209 bp proximal
Vav2	vav 2 oncogene			Intron
				Noncoding-Transcript-Variant