rs27234583 SNP Detail

Summary

• ID
  rs27234583
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:139222751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATGGGTA TTAATTTGTA
  CCGAATCCAC AGTATTGTAT TGACCTTCAC GTTTGTTTGG TGAGATTGTA AACTTCAAGT
  TTATTGGAAT TAAAATGTTC TAGTTCCTTT TGGAATTATG AAGATATTGG TTTTATTTTT
  TTTCAAAATG ATAAGGGCAG GAGGATAGCC CTCTGTTTGT CTTAGGATCA GCTTCCAACT
  M
  CTCTCAGGTG GCATTTGCAT TTACTCTGGT GCTAAATCTA CCCAGGAAGC TGGGCAAACA
  ACTGATTTCC TTCAGTTGGA TTTTCAATTA CACGGGCTGT GCAGTCAGAT GTCCAGAGAT
  CCTAGGCTGC CAGGCAGCAT TGCCTTTGTT TGGTTAGTTA AAGAAATACT AGTTTGCTTG
  CCTTTAAAGT CCTCCTTCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37441113	NES08958516	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	C		C	A	C		C
ss320526998	CHEV_2_139206567	CHEVERUD	SCREENING_POP	f	SNP											A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27234583					SNP	A	A	A	A	A	A	C	A	A	C	A	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37441113	NES08958516	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139222751 () rs orientation: forward

Symbol	Name	Function Class
Rr566017	regulatory region 566017	853 bp proximal
Rr566018	regulatory region 566018	1015 bp proximal