rs27234578 SNP Detail

Summary

• ID
  rs27234578
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:139223969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACAAGGT GGCAGCATAA
  GCTTAGCCAT GTCTGTATTT CCACGTTATG AGCTCCTACT GAATCTCCCT TCTACTTTCC
  CCCTTTTAGC TCTGCACTGA TACACCACTG AGACTGCCAG CAGTAAGTAA ATTACAGTGG
  TTTCACTGAG TTCTAGTAGC TTCCAAGGTG TCTGTGCTGA CAGCAGTTTG TGACATCTCC
  R
  AAGGAGCTAT GCTTCCTTTT TTGGTCCAAA GCCAAGGATG ACACTATCTT CTTCTCTACA
  CTATATGCAC AGGTGCTTCT AGCTCAAGGG CACAAAATCC ACAACAACAG AAATCTCGCA
  GAAAAAGACA GTAAACCTGA AGCTCTTAAA GGTGGGTTGA GGAGATTCCA GCTAAGAATC
  ATCCAGGGAA AAACCTGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37441108	NES08958490	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27234578					SNP	G	G	G	G	G	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37441108	NES08958490	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139223969 () rs orientation: forward

Symbol	Name	Function Class
Gm14071	predicted gene 14071	1783 bp downstream
Rr566017	regulatory region 566017	within coordinates
Rr566018	regulatory region 566018	182 bp distal