rs27234577 SNP Detail

Summary

• ID
  rs27234577
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:139224125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTTCCAA GGTGTCTGTG
  CTGACAGCAG TTTGTGACAT CTCCGAAGGA GCTATGCTTC CTTTTTTGGT CCAAAGCCAA
  GGATGACACT ATCTTCTTCT CTACACTATA TGCACAGGTG CTTCTAGCTC AAGGGCACAA
  AATCCACAAC AACAGAAATC TCGCAGAAAA AGACAGTAAA CCTGAAGCTC TTAAAGGTGG
  R
  TTGAGGAGAT TCCAGCTAAG AATCATCCAG GGAAAAACCT GACTTTTCAC GGGCAATCTT
  TGTGCCAGGA GAACCTTCCA TCCTGGATAA AACAGGCCTA TGGTGGCTCA GAGAAGCATG
  CGTAAAGGTA ACTTGTCTTC CAGGAGGAGT TTTGTAGAGA TTAAAACATA TCTCACCTGG
  TTATCCCTCT GCATTCCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37441107	NES08958491	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27234577					SNP	G	G	G	G	G	G	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37441107	NES08958491	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139224125 () rs orientation: forward

Symbol	Name	Function Class
Gm14071	predicted gene 14071	1627 bp downstream
Rr566017	regulatory region 566017	44 bp distal
Rr566018	regulatory region 566018	338 bp distal