rs27234571 SNP Detail

Summary

• ID
  rs27234571
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:139224774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGGCTGC TAAAAGAGCA
  GCAGTGTGGT AGAGCTTCTG CTAAGCAAAG GCCAGGAAAC CACCAACTAA CTGCCCTCCT
  TGCTGCAGGA GGAGGTAAGA TAAAATAACA CTTGAGAACC TACCCTGGCT CTGGCAACTG
  AAGTCAATAC TGGAGCCCTA TGCTCTGAGA CCTTCCCAGA CTAACAACTT GAGAAAGTGC
  Y
  TCTTCTGTCT GGGCCTGTTG ACTTCAAAGA AGTTTAGTTT GTTTCAGGCT AAGCAGCATC
  AAACAGCATC AGCCTGACCC AGGCAGGCTC AGGTCCCTGC TTGTCTACTT CAAACTGTGC
  CCTTGGACCG GCAGCCATAG AGATCCAACC ACAGAGGCAC CTACATCCAT TTTATATGCT
  CTTTGATAAA GCTTGCCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37441101	NES08958497	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27234571					SNP	C	C	C	C	C	C	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37441101	NES08958497	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139224774 () rs orientation: forward

Symbol	Name	Function Class
Gm14071	predicted gene 14071	978 bp downstream
Rr566017	regulatory region 566017	693 bp distal
Rr566018	regulatory region 566018	987 bp distal