rs27234566 SNP Detail

Summary

• ID
  rs27234566
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:139225116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGTGACTT GAGAAGGATG TTAGTTGTGA GGCTATTCAT
  GTCCATGTTT TCAGAATTAG AAAGGAGTCA ATAAGTCATT CATTGGGCAA GACTGTGTAT
  R
  CAGAGGGACA AGGTATAAGA ATGCTGCCCT AATGTATACA CCAATTCTGG GAGGAAGAGA
  AGGGAGGGCT GAGTAGCTTT TCATTGTAGG TACAATGCTT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37441096	NES08958502	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27234566					SNP	A	A	A	A	A	G	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37441096	NES08958502	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139225116 () rs orientation: forward

Symbol	Name	Function Class
Gm14071	predicted gene 14071	636 bp downstream
Rr566017	regulatory region 566017	1035 bp distal
Rr566018	regulatory region 566018	1329 bp distal