rs27217949 SNP Detail

Summary

• ID
  rs27217949
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:139896122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGATGGGG GCCGGGGGGG ATTGAAAGAG ACAGACAGAA
  AAATTAAACT TCCTGTATTT TGTGTCTGAC AATCCCTCTG GAATAGGTTC CATGGGACTT
  S
  AAAGTTGTCC AGTCTAAAAA TAGCCAAAGG TTAATGACCA GACAAGATAT GAGAAATAAG
  TCTTCTCTGG GTAAAGCTAA GAGGAGACTT GCTATCTTTT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss37439271	NES08964136	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs27217949					SNP	G	G	G	G	G	G	C	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37439271	NES08964136	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139896122 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tasp1	taspase, threonine aspartase 1			Intron
				Noncoding-Transcript-Variant
Tssr20476	transcription start site region 20476			1805 bp upstream
Tssr20477	transcription start site region 20477			1833 bp upstream
Tssr20478	transcription start site region 20478			1850 bp upstream