rs27217924 SNP Detail

Summary

• ID
  rs27217924
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:139908083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTGCAATG AATGCAACAT
  ATACAAAACT GCAATTTCTA GTTTTAACCA TATTATACAC ATACACTTGT CGGTGACATC
  TACAACACCT AAGAAATTAT AAAGCACAAA ATCCTTAGTG GCGGCAACTA TGTTAATCTC
  TTGTTCTGCA ATTCCCAAGC ATTTTCTAAT AACCACGGCC ACTGCTTCTA ATAACCAAAC
  K
  CCTGAGTGCG TAAGATAAAC TCCCTTAGCT TGTTATTCAA AGAAAGGTCT TGGTTCAATG
  GCCCCCAATA AACCTTCCCT TCCTCTCCTC GGTATAATTA AGTTGAACTC GGAGGAATCC
  CTATGCCTTC TACTTCAAAA CACCTCCAGT TTACAGCTAC TCGCCCGCCT CTCCAGCATC
  TTCACTGACT CAGTCCTAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss37439246	NES08963624	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G		T		G
ss320528017	CHEV_2_139891899	CHEVERUD	SCREENING_POP	f	SNP								G		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs27217924					SNP	G	G	G	G	G	G	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37439246	NES08963624	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139908083 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12337	CpG island 12337			153 bp proximal
Rr397340	regulatory region 397340			503 bp upstream
Rr566073	regulatory region 566073			within coordinates
Rr566074	regulatory region 566074			307 bp distal
Rr566075	regulatory region 566075			281 bp proximal
Rr566076	regulatory region 566076			587 bp proximal
Tasp1	taspase, threonine aspartase 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr26542	transcription start site region 26542			316 bp upstream
Tssr26543	transcription start site region 26543			498 bp downstream