rs27217923 SNP Detail

Summary

• ID
  rs27217923
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:139908713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATACGGAGA CCGAGGCTAG GCAGCGGCGA CGCGGACAGC
  GTCAGAACGA GGGACACTCA CCCGCGTCAG CGCAGAGCAC TCACACACAG GAAGTAGTCG
  Y
  TCGCCCGTTG CCAGGGTGAG GAAGCGGGAG TGGCGTAAAG CCTTTCCATT GGTCGACGTG
  CACACGTGGC CGGAAGCAGA CGCCCCGCGA GCCTGAGTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	SM/J	WSB/EiJ
ss37439245	NES08963625	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T			C
ss147670567	ENSMUSSNP2135677	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					C
ss320528021	CHEV_2_139892529	CHEVERUD	SCREENING_POP	f	SNP									T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	SM/J	WSB/EiJ
rs27217923					SNP	T	T	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37439245	NES08963625	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139908713 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12337	CpG island 12337			within coordinates
Rr397340	regulatory region 397340			within coordinates
Rr566073	regulatory region 566073			44 bp distal
Rr566074	regulatory region 566074			937 bp distal
Rr566075	regulatory region 566075			328 bp distal
Rr566076	regulatory region 566076			within coordinates
Tasp1	taspase, threonine aspartase 1			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr26542	transcription start site region 26542			946 bp upstream
Tssr26543	transcription start site region 26543			within coordinates