rs27205775 SNP Detail

Summary

• ID
  rs27205775
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:35773698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTCCTTG GTCACACTCA
  GAATCCCAGC TATGCCAACT GTGTGCCTGG GAGGTTCCTC TTCTCAGTTG CTCTCAGAAT
  GCCTCCCCTT TGTCCTGGGT TCTATGTAGA ATCTACCTGC TTTGGAGGTT CACCTGTTGG
  TTCTGATGGT AAAGGAGCCC AGAGAAATGC TTGCCAAGGT AAGAAGAGTG GACATCTCAA
  Y
  CAGTCGCACC GAGGCAGGCT CCCTCCATTC TTTACAGCAG GGCTATTATG GTGAGAAGGG
  GTAAATGAAA TGGGAGTAGA CTGTGCCAAG TTACTGTGGG AAGGGGGCCT TCTGGGCTTC
  CATAAGTCAT GTATCAAACA GCTGTAGTTG AATCAAAGGC AAGCAGAGTA TAACCCAGGC
  ACTAAGAGGT ATCACAGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37391099	NES08748511	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27205775					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37391099	NES08748511	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35773698 () rs orientation: forward

Symbol	Name	Function Class
Gm35396	predicted gene, 35396	within coordinates
Rr555808	regulatory region 555808	658 bp proximal
Tssr17490	transcription start site region 17490	35 bp downstream
Tssr23728	transcription start site region 23728	974 bp upstream
Ttll11	tubulin tyrosine ligase-like family, member 11	Intron