rs27195779 SNP Detail

Summary

• ID
  rs27195779
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:28749313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGAAGTAG CTGTGGACTG
  AGGCAGTGGG TGCCCCTCTT AGGGAGAAGG AACAGCTTTT CCCCACTGTC TGCATACCCA
  GGGGGTCCTG TGAACCCCCG TAGTCTGGCA CACACACTAG GATGCATGAA AGGCCTACAG
  CCAGCACTTG CCGTGGCTTT GCCCTCTCCT TAGCATTTTA GCATTAGTTT TAATGTGGTC
  R
  TCACAGTTTT CATTAAGAGT CCACGTTCTG ACTCCTCTAC CATAGCAAGA GATTCTTAAT
  TGTTTTGCAG GTGGCTTAAA AACCAGGCTT AGAAAACAGA AGTACTTCAC CAGTTCTACC
  AGGGCTTCCC TGGCCATGCG TGGTTTAGTT GATTATCTAG ACCACAGTAA GGTAACACGA
  GTTCCGTGCC ATTTGTGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37409700	NES08764403	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27195779					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37409700	NES08764403	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28749313 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ddx31	DEAD/H box helicase 31			Intron
				Noncoding-Transcript-Variant
Rr553919	regulatory region 553919			1523 bp proximal