rs27195126 SNP Detail

Summary

• ID
  rs27195126
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31856799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTATCTATA TGATTTTGGT GGCTTAATCA ATGTCTACGT
  TTAAAAGATT AAGTAACAAT GTTTTTGCAT TCTTCTTATC TGAAGAATGT GTCTTTCTGT
  R
  GGTGAGATTT TACAGGGTTT TTGCAGACTT TTCAGACTAA AAAGAGAAAA TTGTAGGTCA
  CAAAGGTCAG CGGGATTCTT ACCATGCGCA GGTCACTAGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37400957	NES08755887	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27195126					SNP	A	A	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400957	NES08755887	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31856799 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aif1l	allograft inflammatory factor 1-like			Intron
				Noncoding-Transcript-Variant
Gm13442	predicted gene 13442			within coordinates
Rr554766	regulatory region 554766			1396 bp distal
Rr554767	regulatory region 554767			1477 bp distal
Tssr459	transcription start site region 459			1102 bp downstream