rs27194899 SNP Detail

Summary

• ID
  rs27194899
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31943408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTAAGATG CTGTTTTGTA
  ATGCTTTAAG GTCATGGTGC AGTCAGTGTG ACTGTGGTCC TATTGGCTTT TGTGTCCCCC
  ATGCCACAGC TTGCTCAGGT GTGCCCTTAT GTCTCAGCCT TGGCCTCAGA CAGGGAGTTC
  AAGCCTCCAT CCATCCTTAT TCAGGGGAAG AACATGACCA TCAGGGATGG GCGCTCCCCC
  R
  GAGTGTTCAG TGGCTTCTTA TCATCTCAAG AGGAATCTGC CCTGCTGGGT TCCTAACCAG
  CCATCACCAG AGCCAAGACA AGACCTAGAA TTAGGCACAG GGTCCACCCG GACTGTCACC
  CATTCTCTGT GCCACAGAGA CTTGTCTGCA TGCTTCACTC ATTAGGGGCT CTGCCTCTTC
  TGAGGAGCTG GAGCCTTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37400727	NES08754351	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27194899					SNP	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400727	NES08754351	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31943408 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fam78a	family with sequence similarity 78, member A			Intron
				Noncoding-Transcript-Variant
Gm16534	predicted gene 16534			within coordinates
Nup214	nucleoporin 214			mRNA-UTR
Rr554781	regulatory region 554781			1920 bp proximal
Tssr17238	transcription start site region 17238			1332 bp downstream