rs27193143 SNP Detail

Summary

• ID
  rs27193143
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31183355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCAAAAAC AAACTTGAGG
  TTTTTTTTTT TTTTTTTTTT TTTTAATTTT GCAACTTTAA ATTTGATGTT AACAGCAGAA
  AGAAAATGGA GAGCCTTGTT CTGAGAGTAG GAGCTAGGAG AGTGTGTCCG GCACACAGTA
  GAGAGCGTAT GAAGTGGGTT TCCCTGCAAA CTGCTGGCCT CAGCCTCCCT GATGCTAAGA
  K
  GCTGGGTAGG TGTGGCATGT GAATCCCTCT GCTCTCCTGC CCTGACTGCT TTTTGCAGTA
  GTCTTCTTCC CTACCAGGAG TCTGAGAAAG AAGGGGTAGG AGGATAACAC CAGGCCCTGT
  TGGTCCTCAG GACTGGGTCC AGAGCCAGAG AGATGGCTCC ATACTTGTCA CCAGGAGGAG
  CGGGCAACCA TGGCTTCTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37402764	NES08761082	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27193143					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37402764	NES08761082	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31183355 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ncs1	neuronal calcium sensor 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr554598	regulatory region 554598			1560 bp distal
Rr554599	regulatory region 554599			1673 bp distal
Rr554600	regulatory region 554600			1576 bp proximal
Rr554601	regulatory region 554601			1821 bp proximal
Tssr17179	transcription start site region 17179			149 bp downstream