rs27190851 SNP Detail

Summary

• ID
  rs27190851
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:37739658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCTTCAG GGAGGGGTGG
  GTCACTCCTT TCTGAAGGGT CACACAGGAG GAAGGAGGAA GACAGAACTA CAACTCAAGA
  GGCCACCATA GGGTAGGAAG TTTTTAGTGC CCCCTACAGG TAAAGAGAAA GTGTGCAGCT
  ACTGGATTAA AAGTGCATTC TCTTATATTT TTGGTTGTAA GTCTAGCTTT TAACGGCTGA
  S
  CTCTCTAGCC CAAAAGTGCA TTCTCTAGAC AGCCTGAACC AGGGAAACAG AACGCAATTT
  GGCAATATTC TTCTGCAGGT CAAGCCTGGT GGGGACATAC TCCTAGGGAA GTGCCACTGT
  CTCGCTTAGG AAGCTACGGC TGGAATCCCT GTCATTTCTC CTTCCTAACT CTGAGCAAAC
  TGAACTTCAA AGGAGGCTAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37387877	NES08744022	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27190851					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37387877	NES08744022	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:37739658 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dennd1a	DENN domain containing 1A			Intron
				Noncoding-Transcript-Variant
Rr555987	regulatory region 555987			76 bp distal