rs27188066 SNP Detail

Summary

• ID
  rs27188066
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:142439172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTGCTGA ACACAGGGCA
  GTCTGAATTG GCATCTCTTA TTCCAGCGTA GATATTCACA GCATTTGATG TTATTCTCAC
  AACTACCCAG GTTCCAGAGT GAGCCGTCGC CTATTCTATA AGCCTCTCTT TCAGCATCTT
  ATTTTCTCCC TAATGGGGCC AGCCTGGCTT TCTCTGATGA TCCAGAAGAT TCTGACATTT
  Y
  AACATTTATA AATTAATCTA CTTTGCATGG GCTAATCCTG GAAACACAGC AGAAGGAAAC
  ATAGATCTCC TTGCTGTCTC TAATTCCTAA ATCCCTGGCG AGCTAGACTC AGGACTCAGG
  TAACCATCTG CAACTGTGAC TCTTAAAAGT CACTGGGGTA TTAGGAGATG ACTCTGTGGT
  TAAGAGGGCC TGCTGCTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37429488	NES08943127	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27188066					SNP	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37429488	NES08943127	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:142439172 () rs orientation: forward

Symbol	Name	Function Class
Rr566224	regulatory region 566224	1860 bp proximal