rs27188058 SNP Detail

Summary

• ID
  rs27188058
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:142440197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCCATATA ACATAACTCA
  TTCCGTTTAA TCTTCATGGT CACATCCTAA CTCCATATTA TTATACCAAC CTAGGATGTA
  GAAATTTGAG CCCCAGAAGA ATTAGTGGGG AGGTTGTTTA AGGTCATATA GTTATGGGAC
  AAGAGTTGGA GGCAAGGTCC ATTGGTATAC CCTTTCTTCA TGCTGTCTCC ACGTGAGGCA
  Y
  GGAAGCCTTT TGAAGTCCTC AACTGTCAAG AGTAGGTCTC TGCCTTAGGA ATATGGCTGA
  GCCAGTATGC AAAGACAAAC CCATCTCATC TCTGGATGAG GACAGAGCTG GGACTAGGGC
  AAACAGAGGG AGGCCTCAGG TACTAAAACC CTCGACGGTT AAGATAAATA GATTTGAATG
  CAATGTTCTA AAAAATAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37429480	NES08943004	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C	C	C	C	C		C	C	C	T		T
ss147736767	ENSMUSSNP5094784	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
ss320531948	CHEV_2_142424013	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27188058					SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37429480	NES08943004	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:142440197 () rs orientation: forward

Symbol	Name	Function Class
Rr566224	regulatory region 566224	835 bp proximal